STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1497PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV1962 putative glutamate periplasmic binding protein. (305 aa)    
Predicted Functional Partners:
Krad_1496
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_3521 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 0.999
Krad_1495
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro06767 glutamate transport system permease protein GluD.
 0.996
Krad_1498
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5777 glutamate uptake system ATP-binding protein.
 0.991
Krad_4151
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit.
 
 0.956
Krad_4152
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro01895 ABC amino acid transporter, ATP-binding component.
 
 0.886
Krad_1222
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein.
 
 0.883
Krad_0927
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro02230 ABC amino acid transporter, ATP-binding component.
 
 0.882
Krad_0928
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3909 polar amino acid ABC transporter, inner membrane subunit.
 
 0.844
Krad_1223
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msm:MSMEG_3236 ABC-type amino acid transport system, permease component.
 
 0.821
Krad_3651
PFAM: NLPA lipoprotein; KEGG: lxx:Lxx15780 ABC-type transport systems, periplasmic component.
 
  
 0.776
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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