STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1523PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_1615 major facilitator superfamily MFS_1. (446 aa)    
Predicted Functional Partners:
Krad_1522
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sco:SCO3810 GntR-family transcriptional regulator.
       0.773
Krad_1520
PFAM: PfkB domain protein; KEGG: tfu:Tfu_2767 putative carbohydrate kinase.
  
    0.678
Krad_1521
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: ace:Acel_0118 phage SPO1 DNA polymerase-related protein.
       0.668
Krad_1524
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.612
Krad_0619
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: nca:Noca_0496 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
 
  
 0.556
Krad_1326
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: art:Arth_3111 uroporphyrin-III C-methyltransferase.
  
  
 0.538
Krad_1519
Aryl-alcohol dehydrogenase (NADP(+)); PFAM: aldo/keto reductase; KEGG: art:Arth_3453 aryl-alcohol dehydrogenase (NADP(+)).
       0.484
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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