STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1530PFAM: UspA domain protein; KEGG: nca:Noca_2967 UspA domain protein. (133 aa)    
Predicted Functional Partners:
Krad_1528
KEGG: mva:Mvan_6024 conserved hypothetical protein.
 
     0.674
Krad_1529
PFAM: protein of unknown function DUF1232; KEGG: tfu:Tfu_2752 hypothetical protein.
       0.620
sigA
RNA polymerase, sigma 70 subunit, RpoD family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.537
Krad_0886
KEGG: aau:AAur_0890 putative integral membrane protein.
  
     0.513
Krad_2952
PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_1087 GCN5-related N-acetyltransferase.
  
    0.506
Krad_1527
Hypothetical protein.
       0.447
Krad_1548
CoA-binding domain protein; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: art:Arth_1628 GCN5-related N-acetyltransferase.
 
  
 0.422
Krad_4101
KEGG: rxy:Rxyl_2373 membrane protein-like protein.
  
     0.414
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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