STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1547PFAM: nitroreductase; KEGG: nca:Noca_4388 nitroreductase. (192 aa)    
Predicted Functional Partners:
Krad_1546
PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: sma:SAV2423 putative a subunit of topoisomerase IV.
     
 0.628
Krad_3428
PFAM: protein of unknown function DUF181; KEGG: mma:MM1458 hypothetical protein.
  
  
 0.614
Krad_1550
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_1777 type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein.
  
    0.579
Krad_1548
CoA-binding domain protein; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: art:Arth_1628 GCN5-related N-acetyltransferase.
       0.578
Krad_1549
KEGG: sco:SCO5843 hypothetical protein.
       0.577
Krad_0671
PFAM: ABC-2 type transporter; KEGG: msm:MSMEG_6765 ABC-2 type transporter superfamily protein.
 
  
 0.548
Krad_3409
PFAM: luciferase family protein; KEGG: sma:SAV6641 FMN-dependent monooxygenase.
 
  
 0.527
Krad_2961
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin).
     
 0.513
Krad_2137
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro02544 hypothetical protein.
 
    0.512
Krad_2952
PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_1087 GCN5-related N-acetyltransferase.
 
     0.499
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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