STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1559PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ace:Acel_1400 nucleic acid binding, OB-fold, tRNA/helicase-type. (133 aa)    
Predicted Functional Partners:
Krad_1563
KEGG: art:Arth_1642 putative transporter.
     0.847
Krad_1560
KEGG: tfu:Tfu_1932 hypothetical protein.
       0.803
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
     
 0.714
Krad_1561
TrkA-N domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; TrkA-N domain protein; TrkA-C domain protein; KEGG: ace:Acel_1399 TrkA-N domain protein.
  
     0.705
Krad_1558
KEGG: art:Arth_1637 hypothetical protein.
       0.703
Krad_1562
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: aau:AAur_1786 trk-type K+ transport system, NAD-binding component.
  
     0.691
Krad_1019
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: sma:SAV2396 putative potassium transport system, two-component system sensor kinase.
    
 0.630
Krad_1556
KEGG: lxx:Lxx10400 membrane protein.
       0.591
prcB
20S proteasome A and B subunits; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.
  
     0.553
htpX
PFAM: peptidase M48 Ste24p; KEGG: aau:AAur_3055 putative Zn-dependent protease with chaperone function, HtpX-like protein; Belongs to the peptidase M48B family.
   
    0.542
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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