STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1571Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: nca:Noca_3360 regulatory protein, TetR. (227 aa)    
Predicted Functional Partners:
Krad_1572
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sma:SAV7045 reductase.
 
     0.848
Krad_2574
PFAM: regulatory protein TetR; KEGG: mkm:Mkms_1574 transcriptional regulator, TetR family.
  
     0.453
Krad_3477
SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro02238 hypothetical protein.
  
     0.444
Krad_2182
PFAM: regulatory protein TetR; KEGG: msm:MSMEG_1596 transcriptional regulator.
  
     0.400
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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