STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1605PFAM: formate/nitrite transporter; KEGG: bsu:BG12296 putative formate-nitrite transporter. (289 aa)    
Predicted Functional Partners:
Krad_1602
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mmc:Mmcs_5220 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.822
Krad_1603
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mpa:MAP0369 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).
     
 0.775
Krad_1601
PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: mkm:Mkms_5307 molybdopterin oxidoreductase Fe4s4 region.
  
  
 0.755
Krad_1604
PFAM: Polysulphide reductase NrfD; KEGG: msm:MSMEG_1846 polysulphide reductase, NrfD.
  
    0.742
Krad_1027
PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative.
 
    0.672
Krad_2696
PFAM: carbonic anhydrase; KEGG: gvi:glr0945 carbonate dehydratase.
  
    0.610
Krad_1600
PFAM: aldo/keto reductase; KEGG: mkm:Mkms_1378 2,5-didehydrogluconate reductase.
       0.528
Krad_2961
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: nca:Noca_3022 glutamate synthase (ferredoxin).
   
  
 0.503
Krad_1326
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: art:Arth_3111 uroporphyrin-III C-methyltransferase.
  
 0.494
Krad_1606
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nca:Noca_2984 chemotaxis sensory transducer.
       0.468
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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