STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Krad_1612TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase. (537 aa)    
Predicted Functional Partners:
Krad_1393
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rha:RHA1_ro06530 ammonium transporter.
 
      0.702
Krad_3507
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase.
 
  
0.696
Krad_3541
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase.
 
  
0.590
Krad_1613
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ace:Acel_1751 methyl-accepting chemotaxis sensory transducer.
   
   0.587
Krad_4323
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: fal:FRAAL6490 hypothetical protein.
 
 
0.535
Krad_1614
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: art:Arth_2126 tRNA/rRNA methyltransferase (SpoU).
       0.520
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: aau:AAur_2482 glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.520
Krad_0606
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: ace:Acel_1481 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.518
Krad_0392
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mva:Mvan_3629 diguanylate cyclase with PAS/PAC sensor.
 
 
0.510
Krad_1678
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mva:Mvan_3629 diguanylate cyclase with PAS/PAC sensor.
 
 
0.508
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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