STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1617PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nca:Noca_3610 YbaK/prolyl-tRNA synthetase associated region. (186 aa)    
Predicted Functional Partners:
Krad_1618
PFAM: PEBP family protein; KEGG: nca:Noca_2599 PEBP family protein.
       0.814
Krad_1616
KEGG: art:Arth_3391 hypothetical protein.
       0.773
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
       0.584
Krad_1621
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: ace:Acel_0831 flagellar hook-associated protein 3.
   
   0.448
Krad_2909
Hypothetical protein; KEGG: sma:SAV6427 transcriptional regulator.
      
 0.446
Krad_3247
KEGG: nca:Noca_3128 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.413
Krad_0648
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: tfu:Tfu_2696 geranylgeranyl reductase, plantal and prokaryotic.
  
     0.410
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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