STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1643Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: rha:RHA1_ro07249 possible transcriptional regulator. (131 aa)    
Predicted Functional Partners:
Krad_1644
PFAM: peptidase M48 Ste24p; KEGG: mkm:Mkms_2855 peptidase M48, Ste24p.
 
    0.963
Krad_0783
PFAM: Heavy metal transport/detoxification protein; KEGG: aau:AAur_pTC10131 heavy metal-associated domain protein.
  
  
 0.741
Krad_1642
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sco:SCO3945 putative cytochrome oxidase subunit I.
 
   
 0.704
Krad_1641
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: tfu:Tfu_0637 cytochrome bd ubiquinol oxidase, subunit II.
 
     0.684
Krad_1640
TIGRFAM: ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD; ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3947 putative ABC transporter.
       0.659
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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