STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1646Hypothetical protein; KEGG: sco:SCO5397 large Ala/Glu-rich protein. (717 aa)    
Predicted Functional Partners:
Krad_2048
KEGG: sma:SAV3459 hypothetical protein.
    
 0.893
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.851
Krad_1645
Hypothetical protein.
       0.828
Krad_1835
KEGG: rha:RHA1_ro00878 hypothetical protein.
    
 0.789
Krad_0562
KEGG: fal:FRAAL6247 hypothetical protein; putative membrane protein.
   
 0.761
Krad_2727
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rha:RHA1_ro08967 dehydrogenase.
    
 0.759
Krad_0611
PFAM: histone deacetylase superfamily; KEGG: art:Arth_3345 histone deacetylase superfamily.
    
 0.708
Krad_4406
ADP-ribosylation/Crystallin J1; PFAM: Dual specificity protein phosphatase; ADP-ribosylation/Crystallin J1; KEGG: sco:SCO0086 ribosylglycohydrolase (secreted protein).
   
 0.694
Krad_1013
Non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rha:RHA1_ro01559 probable helicase.
   
 0.652
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.651
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.