STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1680PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: aau:AAur_2000 putative dehydrogenase. (325 aa)    
Predicted Functional Partners:
Krad_1681
PFAM: alpha/beta hydrolase fold; AMP-dependent synthetase and ligase; KEGG: aau:AAur_1999 putative hydrolase/AMP-binding domain protein.
 
 
 0.963
Krad_1682
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: aau:AAur_1998 putative 3-oxoacyl-[ACP] synthase III.
 
   
 0.954
Krad_1679
KEGG: lxx:Lxx12230 hypothetical protein.
       0.757
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.502
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.499
Krad_1683
PFAM: transglutaminase domain protein; KEGG: ace:Acel_0661 transglutaminase domain protein.
       0.487
Krad_1684
PFAM: protein of unknown function DUF58; KEGG: ace:Acel_0660 protein of unknown function DUF58.
       0.487
Krad_1685
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: ace:Acel_0659 ATPase associated with various cellular activities, AAA_3.
       0.487
Krad_3305
KEGG: sco:SCO2362 hypothetical protein.
   
  0.486
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.485
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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