STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1895PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: ace:Acel_0587 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins. (449 aa)    
Predicted Functional Partners:
Krad_1893
PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_2670 major facilitator superfamily MFS_1.
       0.764
Krad_1894
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: art:Arth_0112 glycerophosphoryl diester phosphodiesterase.
       0.757
Krad_0035
KEGG: tfu:Tfu_0013 putative integral membrane protein.
  
     0.572
Krad_1896
Transcriptional regulator, CdaR; KEGG: nca:Noca_4866 sugar diacid utilization regulator-like protein.
       0.508
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
       0.474
Krad_3220
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_1048 hypothetical protein.
  
     0.456
Krad_1213
TIGRFAM: Anti-sigma factor RshA; KEGG: tfu:Tfu_0549 anti-sigma factor.
  
     0.444
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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