STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1902KEGG: tfu:Tfu_1072 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Krad_1901
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: aau:AAur_1125 putative inosine-uridine preferring nucleoside hydrolase (IunH).
 
     0.679
Krad_1899
KEGG: rxy:Rxyl_1082 hypothetical protein.
       0.636
Krad_1900
PFAM: nitroreductase; KEGG: rxy:Rxyl_1083 nitroreductase.
  
    0.636
Krad_1898
Hypothetical protein.
       0.551
Krad_1410
PFAM: protein of unknown function UPF0027; KEGG: art:Arth_3119 protein of unknown function UPF0027.
 
    0.459
Krad_1195
PFAM: metallophosphoesterase; KEGG: fal:FRAAL0280 serine/threonine protein phosphatase.
 
     0.412
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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