STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1919PFAM: Dak kinase; Dak phosphatase; KEGG: sme:SMb20767 putative dihydroxyacetone (glycerone) kinase protein. (569 aa)    
Predicted Functional Partners:
Krad_1920
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMb20768 hypothetical protein.
     0.922
Krad_1918
Ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: msm:MSMEG_3272 ribose 5-phosphate isomerase.
 
 
 0.911
Krad_2088
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: mkm:Mkms_2598 transcriptional regulator, DeoR family.
     0.716
Krad_4226
Ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: msm:MSMEG_3272 ribose 5-phosphate isomerase.
 
 
 0.690
Krad_1917
PFAM: triosephosphate isomerase; KEGG: sco:SCO0578 triosephosphate isomerase.
 
  
 0.657
Krad_3273
PFAM: GAF domain protein; KEGG: rha:RHA1_ro06080 hypothetical protein.
   
 
 0.620
Krad_1007
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sma:SAV7200 putative transport integral membrane protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
  
 0.582
Krad_1460
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3607 short chain dehydrogenase.
  
  0.580
Krad_1456
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mkm:Mkms_2835 short-chain dehydrogenase/reductase SDR.
   
  0.524
Krad_4329
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: pfl:PFL_1540 aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
  
 0.516
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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