STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1920PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMb20768 hypothetical protein. (338 aa)    
Predicted Functional Partners:
Krad_1919
PFAM: Dak kinase; Dak phosphatase; KEGG: sme:SMb20767 putative dihydroxyacetone (glycerone) kinase protein.
     0.922
Krad_1916
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: msm:MSMEG_6791 3-hydroxybutyryl-CoA dehydrogenase.
 
     0.856
Krad_1918
Ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: msm:MSMEG_3272 ribose 5-phosphate isomerase.
 
   
 0.849
Krad_1917
PFAM: triosephosphate isomerase; KEGG: sco:SCO0578 triosephosphate isomerase.
 
   
 0.638
Krad_1921
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_0882 transcriptional regulator, GntR family.
 
     0.630
Krad_4171
PFAM: oxidoreductase domain protein; KEGG: sco:SCO0735 oxidoreductase.
 
    0.622
Krad_2578
PFAM: oxidoreductase domain protein; KEGG: art:Arth_3384 oxidoreductase domain protein.
 
    0.616
Krad_4226
Ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase; PFAM: Ribose/galactose isomerase; KEGG: msm:MSMEG_3272 ribose 5-phosphate isomerase.
 
   
 0.578
Krad_4056
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rha:RHA1_ro01353 probable acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.498
Krad_3641
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_2548 3-oxoacyl-[acyl-carrier-protein] reductase.
  
    0.481
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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