STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1945PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sru:SRU_2781 oxidoreductase, putative. (258 aa)    
Predicted Functional Partners:
Krad_3137
PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: fra:Francci3_2406 AMP-dependent synthetase and ligase.
 
  
 0.839
Krad_1946
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_0524 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
0.697
Krad_0867
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_0234 oxidoreductase, short chain dehydrogenase/reductase family.
  
    0.609
Krad_4254
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: art:Arth_3056 short-chain dehydrogenase/reductase SDR.
  
    0.561
Krad_1944
Na+/H+ antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.450
Krad_4324
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_3141 short-chain dehydrogenase/reductase SDR.
 
    0.450
Krad_4034
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL5599 putative short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.434
Krad_1947
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rxy:Rxyl_0206 amidohydrolase.
 
     0.413
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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