STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1963PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV3634 putative ABC-transporter ATP-binding protein. (248 aa)    
Predicted Functional Partners:
Krad_1348
PFAM: protein of unknown function DUF214; KEGG: aau:AAur_2502 putative ABC transporter permease protein.
 
 
 0.991
Krad_1870
PFAM: protein of unknown function DUF214; KEGG: ava:Ava_2862 protein of unknown function DUF214.
 
 0.980
Krad_1964
PFAM: protein of unknown function DUF214; KEGG: sco:SCO4664 putative integral membrane protein.
 
 
 0.925
Krad_0928
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3909 polar amino acid ABC transporter, inner membrane subunit.
 
 
    0.889
Krad_4176
NifC-like ABC-type porter; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.846
Krad_3860
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ret:RHE_PB00035 probable oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.808
Krad_4404
PFAM: protein of unknown function DUF214; KEGG: sco:SCO3753 putative integral membrane.
 
 
 0.787
Krad_4151
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit.
 
 
    0.781
Krad_1083
PFAM: protein of unknown function DUF214; KEGG: sth:STH977 ABC transporter permease protein.
 
 0.641
Krad_2321
PFAM: protein of unknown function DUF214; KEGG: cdi:DIP0449 putative ABC transport system integral membrane protein.
  
 
 0.557
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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