STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_1976PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_2902 hydrolase, putative. (246 aa)    
Predicted Functional Partners:
Krad_1974
PFAM: regulatory protein ArsR; KEGG: pde:Pden_1214 regulatory protein, ArsR.
       0.605
Krad_1975
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_1366 hypothetical protein.
       0.605
Krad_1973
Hypothetical protein.
       0.518
Krad_1977
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx08750 ABC transporter, ATP-binding protein.
  
    0.440
Krad_1978
KEGG: sco:SCO6361 integral membrane protein.
  
    0.440
Krad_1979
KEGG: sco:SCO6361 integral membrane protein.
  
    0.440
Krad_1980
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: lxx:Lxx08740 two-component system, sensor protein.
     
 0.424
Krad_1981
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: fal:FRAAL2982 hypothetical sensory transduction protein.
       0.416
Krad_1327
PFAM: Rieske [2Fe-2S] domain protein; KEGG: art:Arth_3274 Rieske (2Fe-2S) domain protein.
  
    0.405
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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