STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2000KEGG: nca:Noca_0250 putative ABC transporter transmembrane protein. (279 aa)    
Predicted Functional Partners:
Krad_2001
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL2979 ABC transporter (ATP-binding protein).
 
     0.946
Krad_1999
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: art:Arth_4135 putative signal transduction histidine kinase.
 
  
 0.845
Krad_0579
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5395 putative ABC transporter ATP-binding subunit.
 
     0.773
Krad_1998
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fal:FRAAL2982 hypothetical sensory transduction protein.
  
    0.773
Krad_1977
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx08750 ABC transporter, ATP-binding protein.
 
     0.770
Krad_1997
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mkm:Mkms_0189 helix-turn-helix domain protein.
       0.576
Krad_3974
Hypothetical protein; KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.574
Krad_1516
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2763 ABC transporter protein, ATP-binding component.
  
  0.503
Krad_0320
PFAM: nuclear export factor GLE1.
  
     0.501
Krad_3976
Hypothetical protein; KEGG: sma:SAV4249 putative integral membrane protein.
  
 
 0.496
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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