STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2069KEGG: rha:RHA1_ro04511 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Krad_2070
PFAM: Transthyretin; KEGG: mul:MUL_0457 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.999
Krad_2071
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
   
 0.984
Krad_2077
Allantoinase; PFAM: amidohydrolase; KEGG: art:Arth_3693 allantoinase.
 
  
 0.982
Krad_2072
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nca:Noca_1141 guanine deaminase.
       0.784
Krad_2075
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rha:RHA1_ro04506 probable xanthine dehydrogenase molybdenum binding subunit.
 
   
 0.763
Krad_4281
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: msm:MSMEG_1297 hydroxydechloroatrazine ethylaminohydrolase.
 
     0.666
Krad_2079
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: yps:YPTB0871 N-carbamoyl-L-amino acid amidohydrolase.
   
 0.664
Krad_2068
KEGG: rha:RHA1_ro04499 hypothetical protein.
 
   
 0.657
Krad_2074
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mva:Mvan_5280 molybdopterin dehydrogenase, FAD-binding.
 
   
 0.591
Krad_4265
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rxy:Rxyl_2834 NCS1 nucleoside transporter family.
 
   
 0.499
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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