STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2080PFAM: sugar isomerase (SIS); KEGG: art:Arth_3429 transcriptional regulator, RpiR family. (285 aa)    
Predicted Functional Partners:
Krad_2078
Serine--pyruvate transaminase; PFAM: aminotransferase class V; KEGG: pat:Patl_2052 aminotransferase, class V.
 
     0.888
Krad_2079
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: yps:YPTB0871 N-carbamoyl-L-amino acid amidohydrolase.
 
     0.870
Krad_2081
PFAM: Amidase; KEGG: fal:FRAAL4260 putative glutamyl-tRNA(Gln) amidotransferase, subunit A; Belongs to the amidase family.
 
     0.707
Krad_2077
Allantoinase; PFAM: amidohydrolase; KEGG: art:Arth_3693 allantoinase.
       0.695
Krad_2075
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rha:RHA1_ro04506 probable xanthine dehydrogenase molybdenum binding subunit.
  
    0.501
Krad_2074
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mva:Mvan_5280 molybdopterin dehydrogenase, FAD-binding.
       0.495
Krad_2076
PFAM: protein of unknown function DUF182; KEGG: sco:SCO6174 hypothetical protein.
       0.480
Krad_0770
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sma:SAV3923 RpiR-family transcriptional regulator.
  
     0.473
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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