STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2139PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: abo:ABO_0508 D-isomer specific 2-hydroxyacid dehydrogenase family. (312 aa)    
Predicted Functional Partners:
Krad_2141
KEGG: rle:RL3795 hypothetical protein.
 
     0.819
Krad_2144
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3326 extracellular solute-binding protein, family 1.
 
     0.801
Krad_2140
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL3799 putative hydroxypyruvate isomerase; Belongs to the hyi family.
   
   0.782
Krad_2142
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_3312 putative ABC-type sugar transport system, permease component.
       0.773
Krad_2143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1704 putative transport system permease ABC transporter protein.
       0.757
Krad_3591
Putative phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
 
 0.662
Krad_2147
KEGG: mes:Meso_4442 hypothetical protein.
 
 
   0.529
Krad_2145
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: art:Arth_4143 transcriptional regulator, GntR family.
       0.520
Krad_1252
PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: sma:SAV2918 putative homoserine dehydrogenase.
 
 
 0.478
Krad_2146
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rha:RHA1_ro02575 probable 2-hydroxy-3-oxopropionate reductase.
 
     0.436
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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