STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2182PFAM: regulatory protein TetR; KEGG: msm:MSMEG_1596 transcriptional regulator. (207 aa)    
Predicted Functional Partners:
Krad_2813
PFAM: regulatory protein TetR; KEGG: mva:Mvan_1492 transcriptional regulator, TetR family.
  
     0.772
Krad_2181
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: msm:MSMEG_1595 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.674
Krad_2183
Putative transcriptional regulator, MerR family; PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: art:Arth_2739 transcriptional regulator, MerR family.
       0.405
Krad_1571
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: nca:Noca_3360 regulatory protein, TetR.
  
     0.400
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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