STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2225PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: tfu:Tfu_0849 regulatory proteins, IclR. (249 aa)    
Predicted Functional Partners:
Krad_0904
TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: cef:CE0713 putative UreA carboxylase.
  
    0.935
Krad_0533
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: atc:AGR_L_1866 hypothetical protein.
  
    0.924
Krad_0524
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ace:Acel_0604 SMP-30/gluconolaconase/LRE domain protein.
      0.896
Krad_2226
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rde:RD1_3860 racemase, putative.
 
   
 0.573
Krad_2146
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rha:RHA1_ro02575 probable 2-hydroxy-3-oxopropionate reductase.
 
     0.446
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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