STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2226PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rde:RD1_3860 racemase, putative. (366 aa)    
Predicted Functional Partners:
Krad_2225
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: tfu:Tfu_0849 regulatory proteins, IclR.
 
   
 0.573
Krad_1220
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin.
 
  
 0.492
Krad_4333
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.482
Krad_2227
TIGRFAM: malate synthase A; PFAM: malate synthase; KEGG: tfu:Tfu_0819 malate synthase; Belongs to the malate synthase family.
       0.472
Krad_2232
KEGG: sus:Acid_7648 hypothetical protein.
 
     0.442
Krad_3563
KEGG: ani:AN8599.2 hypothetical protein.
  
     0.433
Krad_0524
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ace:Acel_0604 SMP-30/gluconolaconase/LRE domain protein.
 
   
 0.430
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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