STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2323PFAM: regulatory protein LuxR; KEGG: msm:MSMEG_6828 transcriptional regulator. (955 aa)    
Predicted Functional Partners:
Krad_3437
PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; Tetratricopeptide TPR_4; KEGG: msm:MSMEG_4431 putative regulatory protein.
 
 
0.655
Krad_2311
PFAM: regulatory protein LuxR; KEGG: msm:MSMEG_6828 transcriptional regulator.
 
 
0.639
Krad_0172
PFAM: regulatory protein LuxR; KEGG: rxy:Rxyl_2946 transcriptional regulator, LuxR family.
 
 
 0.614
Krad_2324
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mtc:MT0468 hypothetical protein.
 
   
 0.609
Krad_1996
KEGG: ret:RHE_CH02726 putative hydrolase protein.
 
     0.592
Krad_2730
KEGG: sco:SCO7132 hypothetical protein.
 
     0.530
Krad_0458
PFAM: cyclic nucleotide-binding; ATP-binding region ATPase domain protein.
  
 
 0.518
Krad_2299
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO7297 two-component sensor histidine kinase.
  
 
 0.518
Krad_3441
KEGG: sco:SCO7121 secreted protein.
 
     0.468
Krad_3528
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; KEGG: sma:SAV4111 transcriptional regulator.
 
  
 0.438
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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