STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2484PFAM: UspA domain protein; KEGG: rha:RHA1_ro00663 possible universal stress protein. (146 aa)    
Predicted Functional Partners:
Krad_2485
PFAM: class II aldolase/adducin family protein; KEGG: pde:Pden_3382 class II aldolase/adducin family protein.
       0.520
Krad_2486
PFAM: type III effector Hrp-dependent outers; KEGG: rfr:Rfer_0445 type III effector Hrp-dependent outers.
       0.520
Krad_2952
PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_1087 GCN5-related N-acetyltransferase.
  
    0.507
Krad_1547
PFAM: nitroreductase; KEGG: nca:Noca_4388 nitroreductase.
 
  
 0.489
Krad_2483
TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: nfa:nfa48000 putative fructose-1,6-bisphosphatase.
       0.445
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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