STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2485PFAM: class II aldolase/adducin family protein; KEGG: pde:Pden_3382 class II aldolase/adducin family protein. (226 aa)    
Predicted Functional Partners:
Krad_2486
PFAM: type III effector Hrp-dependent outers; KEGG: rfr:Rfer_0445 type III effector Hrp-dependent outers.
  
 0.995
Krad_2487
PFAM: Asp/Glu racemase; KEGG: bja:bll2908 hypothetical protein.
 
     0.827
Krad_3307
KEGG: rha:RHA1_ro02446 possible citrate lyase beta subunit.
   
    0.721
Krad_4282
PFAM: HpcH/HpaI aldolase; KEGG: aau:AAur_3005 putative citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.721
Krad_2492
Regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
    
 0.644
Krad_2484
PFAM: UspA domain protein; KEGG: rha:RHA1_ro00663 possible universal stress protein.
       0.520
Krad_2140
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL3799 putative hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.515
Krad_0582
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_A2758 altronate dehydratase.
 
   
 0.501
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
  
 0.454
Krad_1385
PFAM: carbohydrate kinase FGGY; KEGG: sco:SCO0814 putative rhamnose kinase.
 
  
 0.452
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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