STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2490Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rxy:Rxyl_1028 transcriptional regulator, GntR family. (240 aa)    
Predicted Functional Partners:
Krad_2127
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2910 transcriptional regulator, GntR family protein.
  
     0.774
Krad_4399
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rxy:Rxyl_0554 GntR-like protein.
  
  
 0.771
Krad_2681
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sco:SCO1410 GntR-family transcriptional regulator.
  
     0.761
Krad_4225
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rha:RHA1_ro03477 probable transcriptional regulator, GntR family.
  
     0.718
Krad_3893
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mkm:Mkms_5416 GntR domain protein.
  
  
 0.608
Krad_1633
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2599 GntR-family protein transcriptional regulator.
  
  
 0.580
Krad_2491
Hypothetical protein.
       0.572
Krad_0551
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_2682 transcriptional regulator.
  
  
 0.529
Krad_2492
Regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.477
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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