STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2541PFAM: Xylose isomerase domain protein TIM barrel; KEGG: art:Arth_0574 xylose isomerase domain protein TIM barrel. (252 aa)    
Predicted Functional Partners:
Krad_2540
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: art:Arth_0573 oxidoreductase domain protein.
 
    0.960
Krad_3721
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_0717 NADH-dependent dehydrogenase.
 
    0.831
Krad_0976
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: aau:AAur_1535 oxidoreductase family, NAD-binding Rossmann fold domain protein.
 
    0.808
Krad_2542
Hypothetical protein.
       0.773
Krad_2544
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0317 sugar ABC transporter permease.
  
    0.647
Krad_2543
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3776 sugar ABC transporter permease.
  
    0.642
Krad_2545
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1864 putative multiple sugar transport system substrate-binding protein.
  
    0.640
Krad_4171
PFAM: oxidoreductase domain protein; KEGG: sco:SCO0735 oxidoreductase.
 
    0.528
Krad_4056
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rha:RHA1_ro01353 probable acetolactate synthase; Belongs to the TPP enzyme family.
  
  
 0.498
Krad_2546
PFAM: regulatory protein TetR; KEGG: aau:AAur_3028 putative transcriptional regulator, TetR family.
 
     0.475
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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