STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_2897PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_2576 ABC transporter related. (268 aa)    
Predicted Functional Partners:
Krad_0495
KEGG: lin:lin0147 hypothetical protein.
      0.674
Krad_2898
KEGG: nca:Noca_2575 hypothetical protein.
       0.667
Krad_3093
Putative transcriptional regulator, MerR family; SMART: regulatory protein MerR; KEGG: aau:AAur_1684 hypothetical protein.
  
     0.528
Krad_4064
KEGG: sma:SAV2403 hypothetical protein.
  
     0.512
Krad_1555
KEGG: sma:SAV2403 hypothetical protein.
  
     0.502
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
     0.479
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
 
     0.465
Krad_1857
PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: aau:AAur_2173 hypothetical protein.
 
     0.450
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.445
Krad_3212
KEGG: sma:SAV6109 hypothetical protein.
  
     0.421
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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