STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3016Hypothetical protein; KEGG: rpe:RPE_0517 OmpA/MotB domain protein. (354 aa)    
Predicted Functional Partners:
Krad_3015
PFAM: putative cell wall binding repeat 2-containing protein; KEGG: ctc:CTC00504 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase.
       0.773
Krad_3017
KEGG: nca:Noca_1133 hypothetical protein.
       0.773
Krad_3018
PFAM: Fimbrial assembly family protein; KEGG: ace:Acel_1312 fimbrial assembly family protein.
       0.678
Krad_3019
TIGRFAM: type IV pilus assembly protein PilM; KEGG: ace:Acel_1313 type IV pilus assembly protein PilM.
       0.678
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.511
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.511
Krad_3020
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ace:Acel_1314 peptidase A24A domain protein.
       0.452
Krad_3021
Hypothetical protein.
       0.452
Krad_3022
Hypothetical protein.
       0.452
Krad_3023
Hypothetical protein.
       0.452
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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