STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3083KEGG: msm:MSMEG_6233 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Krad_3082
PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: sco:SCO0184 hypothetical protein.
  
    0.655
Krad_3081
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mbb:BCG_2080c hypothetical protein.
       0.651
Krad_3085
KEGG: oih:OB0964 hypothetical protein.
 
     0.621
Krad_3084
KEGG: fal:FRAAL3165 hypothetical protein.
       0.562
Krad_3086
KEGG: csa:Csal_0081 hypothetical protein.
       0.562
Krad_3382
KEGG: sco:SCO6525 hypothetical protein.
  
     0.526
Krad_2314
KEGG: msm:MSMEG_0890 HD domain protein.
 
     0.517
Krad_4299
PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: nfa:nfa7580 hypothetical protein.
  
    0.488
Krad_4461
KEGG: nca:Noca_3724 putative phosphodiesterase.
 
     0.423
Krad_4206
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpa:MAP0878c hypothetical protein.
 
    0.403
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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