STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3091PFAM: Cobyrinic acid ac-diamide synthase; KEGG: lxx:Lxx15480 plasmid partitioning protein. (256 aa)    
Predicted Functional Partners:
Krad_4506
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: art:Arth_4165 ParB-like partition proteins; Belongs to the ParB family.
 
 
 0.909
Krad_1762
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sfu:Sfum_2606 ParB-like partition proteins; Belongs to the ParB family.
 
 
 0.904
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
 
 0.618
Krad_1482
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: art:Arth_1454 cell divisionFtsK/SpoIIIE.
  
  
 0.556
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
  
 0.525
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.497
Krad_3092
Hypothetical protein.
       0.469
Krad_4507
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sma:SAV4309 putative partitioning or sporulation protein.
  
 
  
0.454
Krad_3147
TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sco:SCO1780 putative DNA repair protein.
 
   
 0.436
Krad_3254
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lxx:Lxx08390 short chain dehydrogenase.
  
     0.401
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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