STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3098PFAM: protein of unknown function DUF881; KEGG: sco:SCO1385 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Krad_3099
PFAM: protein of unknown function DUF1290; KEGG: sma:SAV6979 hypothetical protein.
 
  
 0.972
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
      0.891
Krad_3100
PFAM: protein of unknown function DUF881; KEGG: sma:SAV6978 hypothetical protein.
 
   
0.872
Krad_3101
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sma:SAV6976 putative CDP-diacylglycerol--glycerol-3-phosphat e 3-phosphatidyl-transferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.812
Krad_0026
PFAM: protein of unknown function DUF881; KEGG: ace:Acel_0015 protein of unknown function DUF881.
  
     0.775
Krad_3094
PFAM: protein of unknown function DUF151; KEGG: nca:Noca_2711 protein of unknown function DUF151.
     
 0.683
Krad_3096
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: sco:SCO1384 hypothetical protein.
       0.555
Krad_3095
PFAM: regulatory protein MerR; KEGG: ace:Acel_1225 transcriptional regulator, MerR family.
       0.513
Krad_3064
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aau:AAur_2307 putative CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.508
Krad_3102
Hypothetical protein.
       0.453
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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