STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3105KEGG: aau:AAur_0453 hypothetical protein. (280 aa)    
Predicted Functional Partners:
Krad_3106
PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0141 peptidase C60, sortase A and B.
 
    0.920
Krad_3108
KEGG: art:Arth_3260 hypothetical protein.
 
     0.920
Krad_3107
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_3259 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.838
Krad_3104
TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; KEGG: tfu:Tfu_2317 ATP-dependent helicase HrpA.
       0.505
Krad_3096
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: sco:SCO1384 hypothetical protein.
   
 
 0.446
Krad_0075
Protein phosphatase 2C-like; PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: ace:Acel_0022 protein serine/threonine phosphatases.
  
 
 0.444
Krad_0012
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05453 probable protein-tyrosine kinase.
    
 
 0.440
Krad_3103
PFAM: heat shock protein Hsp20; KEGG: fal:FRAAL4031 molecular chaperone HSP18 (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
  
   0.426
Krad_3964
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV5256 putative sugar binding secreted protein.
  
     0.426
Krad_1036
KEGG: pac:PPA0050 hypothetical protein.
  
     0.421
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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