STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3132PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein. (322 aa)    
Predicted Functional Partners:
Krad_3136
PFAM: SAF domain protein; KEGG: sco:SCO4524 hypothetical protein.
 
    0.964
Krad_3133
PFAM: type II secretion system protein; KEGG: sco:SCO4527 integral membrane protein.
 
     0.959
Krad_3135
KEGG: sco:SCO4525 hypothetical protein.
 
     0.959
Krad_3134
PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase.
 
  
 0.954
Krad_3129
PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein.
 
  
 0.949
Krad_3125
KEGG: sco:SCO4548 integral membrane protein.
 
     0.892
Krad_3130
KEGG: sco:SCP1.173 hypothetical protein.
  
  
 0.789
Krad_3126
Hypothetical protein; KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH.
 
     0.707
Krad_3131
Hypothetical protein.
       0.682
Krad_3787
PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein.
  
  
 0.674
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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