STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3225TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fal:FRAAL2168 putative phytoene dehydrogenase. (475 aa)    
Predicted Functional Partners:
Krad_3223
PFAM: protein of unknown function DUF422; KEGG: rha:RHA1_ro01102 possible caratenoid biosynthesis protein.
 
   
 0.932
Krad_3229
PFAM: Squalene/phytoene synthase; KEGG: fra:Francci3_1383 squalene/phytoene synthase.
  
 0.926
Krad_3222
KEGG: fra:Francci3_1397 hypothetical protein.
 
  
 0.924
Krad_3224
PFAM: glycosyl transferase family 2; KEGG: fal:FRAAL2169 putative glycosyl transferase.
 
   
 0.921
Krad_0091
PFAM: Lycopene beta and epsilon cyclase; KEGG: sco:SCO0191 lycopene cyclase.
 
  
 0.781
Krad_3220
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_1048 hypothetical protein.
       0.560
Krad_3221
PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa54420 putative hydrolase.
  
    0.554
Krad_1795
PFAM: rhodopsin; KEGG: gvi:gll0198 similar to bacterioopsin.
 
   
 0.546
Krad_3227
PFAM: Polyprenyl synthetase; KEGG: art:Arth_1557 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.529
Krad_3282
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: art:Arth_3390 amine oxidase.
  
     0.460
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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