STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3230Hypothetical protein; KEGG: sco:SCO2105 transcriptional regulatory protein. (138 aa)    
Predicted Functional Partners:
Krad_3231
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: art:Arth_1555 peptidoglycan-binding LysM.
 
     0.721
Krad_3191
PFAM: DivIVA family protein; KEGG: art:Arth_1578 DivIVA family protein.
  
     0.713
Krad_1817
KEGG: aau:AAur_2147 hypothetical protein.
  
     0.642
Krad_3420
KEGG: lxx:Lxx02840 hypothetical protein.
  
    0.638
Krad_3232
PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nca:Noca_3086 protein kinase.
     
 0.609
Krad_1558
KEGG: art:Arth_1637 hypothetical protein.
  
     0.604
Krad_3289
KEGG: art:Arth_1603 integral membrane protein.
  
     0.595
Krad_2949
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV6232 SAM-dependent methyltransferase.
  
     0.589
Krad_2974
KEGG: tfu:Tfu_1082 hypothetical protein.
  
     0.579
Krad_0982
PFAM: iron dependent repressor; FeoA family protein; KEGG: rha:RHA1_ro06652 probable Fe(2+)-dependent transcriptional regulator.
   
    0.573
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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