STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3243PFAM: glycosyl transferase group 1; KEGG: sma:SAV6067 glycosyl transferase. (396 aa)    
Predicted Functional Partners:
Krad_0016
PFAM: glycosyl transferase group 1; KEGG: reh:H16_A2887 glycosyltransferase, probably involved in lipopolysaccharide biosynthesis.
  
  
 
0.924
Krad_3244
KEGG: sco:SCO2134 hypothetical protein.
  
    0.777
Krad_3245
KEGG: nca:Noca_3125 hypothetical protein.
       0.773
Krad_3799
KEGG: sco:SCO3001 hypothetical protein.
  
     0.687
Krad_0892
PFAM: glycosyl transferase group 1; KEGG: net:Neut_2115 glycosyl transferase, group 1.
  
     0.633
Krad_3246
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_5521 methyltransferase type 11.
 
     0.601
Krad_3682
PFAM: glycosyl transferase group 1; KEGG: sth:STH1101 glycosyl transferase.
  
     0.555
Krad_1055
PFAM: glycosyl transferase group 1; KEGG: tko:TK0891 glycosyltransferase, family 4.
  
     0.502
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.498
Krad_3075
TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: nfa:nfa18050 putative glycosyl hydrolase.
   
 0.496
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.