STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3245KEGG: nca:Noca_3125 hypothetical protein. (66 aa)    
Predicted Functional Partners:
Krad_3244
KEGG: sco:SCO2134 hypothetical protein.
       0.804
Krad_3243
PFAM: glycosyl transferase group 1; KEGG: sma:SAV6067 glycosyl transferase.
       0.773
Krad_3247
KEGG: nca:Noca_3128 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.622
Krad_3248
Putative transcriptional regulator, AsnC family; PFAM: regulatory protein AsnC/Lrp family; KEGG: nca:Noca_3129 regulatory protein, AsnC/Lrp family.
       0.549
Krad_3246
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_5521 methyltransferase type 11.
       0.528
Krad_1364
KEGG: rha:RHA1_ro05945 hypothetical protein.
  
     0.523
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.439
Krad_1801
KEGG: nca:Noca_1677 hypothetical protein.
  
     0.420
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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