STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3254PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lxx:Lxx08390 short chain dehydrogenase. (258 aa)    
Predicted Functional Partners:
Krad_3252
PFAM: Rieske [2Fe-2S] domain protein; KEGG: aau:AAur_2209 ubiquinol-cytochrome c reductase iron-sulfur subunit.
 
 
 0.756
Krad_3253
PFAM: Cytochrome b/b6 domain; KEGG: aau:AAur_2210 ubiquinol-cytochrome c reductase cytochrome b subunit.
 
 
   0.728
Krad_3251
PFAM: cytochrome c class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
 
   
 0.633
Krad_3343
PFAM: Acyl transferase; KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase.
 
 
 0.552
Krad_3503
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sco:SCO6026 fatty acid oxidation complex alpha-subunit.
 
 0.539
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: art:Arth_2502 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
    0.501
Krad_3191
PFAM: DivIVA family protein; KEGG: art:Arth_1578 DivIVA family protein.
  
     0.463
Krad_3250
PFAM: cytochrome c oxidase subunit III; KEGG: aau:AAur_2207 cytochrome c oxidase subunit III.
 
     0.441
Krad_3346
Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.421
Krad_3091
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: lxx:Lxx15480 plasmid partitioning protein.
  
     0.401
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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