STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3271PFAM: protein of unknown function DUF779; KEGG: sco:SCO1192 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Krad_3272
PFAM: aldehyde dehydrogenase; KEGG: sma:SAV7177 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.950
Krad_3273
PFAM: GAF domain protein; KEGG: rha:RHA1_ro06080 hypothetical protein.
 
     0.880
Krad_3270
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: psp:PSPPH_3186 oxidoreductase, Gfo/Idh/MocA family.
       0.675
Krad_3274
PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sma:SAV6030 putative nicotinate-nucleotide-dimethylbenzimida zole phosphoribosyltransferase.
       0.419
Krad_3269
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pae:PA3749 probable major facilitator superfamily (MFS) transporter.
       0.411
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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