STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3329PFAM: protein of unknown function DUF1023; KEGG: sco:SCO3760 secreted protein. (339 aa)    
Predicted Functional Partners:
Krad_3331
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO4596 two-component system response regulator.
  
    0.563
Krad_3330
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: nfa:nfa22880 putative two-component system sensor kinase.
       0.558
Krad_2433
KEGG: sco:SCO7732 hypothetical protein.
  
     0.485
Krad_1288
PFAM: cysteine dioxygenase type I; KEGG: nfa:nfa4090 hypothetical protein.
  
   
 0.475
Krad_0484
Putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
     0.474
Krad_4505
KEGG: sma:SAV4307 hypothetical protein.
  
     0.462
Krad_1987
PFAM: DNA polymerase beta domain protein region; KEGG: rha:RHA1_ro03315 hypothetical protein.
  
     0.460
Krad_0470
Hypothetical protein.
  
     0.443
Krad_1570
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV3761 hypothetical protein.
  
     0.441
Krad_4095
KEGG: sma:SAV4747 hypothetical protein.
  
     0.433
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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