STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3338KEGG: ace:Acel_0882 hypothetical protein. (142 aa)    
Predicted Functional Partners:
Krad_3337
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV5802 thiol-specific antioxidant protein.
       0.773
Krad_1430
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV2560 putative acetyltransferase.
  
     0.761
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.758
Krad_1555
KEGG: sma:SAV2403 hypothetical protein.
  
     0.749
Krad_4064
KEGG: sma:SAV2403 hypothetical protein.
  
     0.748
Krad_1311
KEGG: art:Arth_2719 hypothetical protein.
  
     0.720
Krad_1357
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator.
  
     0.710
Krad_0008
KEGG: sma:SAV4323 hypothetical protein.
  
     0.704
Krad_0005
PFAM: protein of unknown function DUF721; KEGG: art:Arth_0005 protein of unknown function DUF721.
  
     0.703
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
     0.681
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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