STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3383PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: rha:RHA1_ro03755 possible membrane protein. (671 aa)    
Predicted Functional Partners:
Krad_3382
KEGG: sco:SCO6525 hypothetical protein.
 
     0.954
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.762
Krad_3385
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ace:Acel_0791 CBS domain containing protein.
       0.762
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.762
Krad_3387
PFAM: PhoH family protein; KEGG: sma:SAV5583 putative phosphate starvation-induced protein.
       0.762
Krad_3388
PFAM: protein of unknown function DUF72; KEGG: nca:Noca_1965 protein of unknown function DUF72.
       0.714
Krad_3389
KEGG: pac:PPA2261 aminotransferase, class IV.
       0.500
Krad_3108
KEGG: art:Arth_3260 hypothetical protein.
 
    0.499
Krad_1978
KEGG: sco:SCO6361 integral membrane protein.
  
     0.459
Krad_3804
KEGG: aau:AAur_2687 hypothetical protein.
  
     0.404
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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