STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3413PFAM: Acetyl xylan esterase; KEGG: art:Arth_3303 acetyl xylan esterase. (332 aa)    
Predicted Functional Partners:
Krad_4187
PFAM: peptidase S15; Acetyl xylan esterase; KEGG: ace:Acel_2045 acetyl xylan esterase.
  
  
 
0.907
Krad_3414
KEGG: sco:SCO6046 hypothetical protein.
       0.773
Krad_3415
PFAM: luciferase family protein; KEGG: sma:SAV1156 monooxygenase.
       0.773
Krad_3416
Hypothetical protein.
       0.723
Krad_3412
PFAM: protein of unknown function DUF1206; KEGG: nca:Noca_2420 protein of unknown function DUF1206.
       0.563
Krad_0410
PFAM: binding-protein-dependent transport systems inner membrane component.
 
     0.425
Krad_0409
PFAM: extracellular solute-binding protein family 1.
 
     0.421
Krad_0584
KEGG: art:Arth_3330 hypothetical protein.
  
     0.413
Krad_3411
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.413
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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