STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3425PFAM: Amidohydrolase 3; KEGG: art:Arth_3965 amidohydrolase 3. (491 aa)    
Predicted Functional Partners:
Krad_1891
PFAM: FxsA cytoplasmic membrane protein; KEGG: sco:SCO1422 putative membrane protein.
  
    0.651
Krad_3426
PFAM: LmbE family protein; KEGG: mma:MM2100 hypothetical protein.
       0.538
Krad_3427
PFAM: glycosyl transferase group 1; KEGG: mth:MTH450 LPS biosynthesis RfbU related protein.
       0.538
Krad_3428
PFAM: protein of unknown function DUF181; KEGG: mma:MM1458 hypothetical protein.
       0.538
Krad_3429
Hypothetical protein; KEGG: csa:Csal_1011 beta-lactamase-like protein.
       0.538
Krad_3430
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: vei:Veis_3569 oxidoreductase domain protein.
       0.538
Krad_3431
Hypothetical protein.
       0.497
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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