STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3435TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: fra:Francci3_1257 helix-hairpin-helix DNA-binding, class 1. (304 aa)    
Predicted Functional Partners:
Krad_3434
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein.
 
  
 0.960
Krad_3026
PFAM: type II secretion system protein; KEGG: ace:Acel_1320 type II secretion system protein.
  
  
 0.707
Krad_3020
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ace:Acel_1314 peptidase A24A domain protein.
   
  
 0.698
Krad_1156
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ace:Acel_2090 type II secretion system protein E.
 
  
 0.690
Krad_2972
KEGG: sco:SCO4186 hypothetical protein.
  
    0.643
Krad_1409
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: art:Arth_2472 DNA protecting protein DprA.
 
  
 0.596
Krad_3436
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rha:RHA1_ro02947 beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
    0.589
Krad_0074
PFAM: cell cycle protein; KEGG: nca:Noca_0025 cell cycle protein; Belongs to the SEDS family.
 
  
 0.514
Krad_0030
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_2526 cell envelope-related transcriptional attenuator.
 
     0.506
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.487
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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